Ion Măndoiu: search on Z-Library

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1

Computational Methods for Next Generation Sequencing Data Analysis || Genomic Variants Detection and Genotyping

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 247 KB

english, 2016

2

SPIE Proceedings [SPIE Photomask Technology 2005 - Monterey, California (Monday 3 October 2005)] 25th Annual BACUS Symposium on Photomask Technology - Yield-driven multi-project reticle design and wafer dicing

Kahng, Andrew B., Weed, J. Tracy, Martin, Patrick M., Mandoiu, Ion, Xu, Xu, Zelikovsky, Alex

Year:

2005

Language:

english

File:

PDF, 268 KB

english, 2005

3

[IEEE 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Las Vegas, NV, USA (2012.02.23-2012.02.25)] 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - The use of graph matching algorithms to identify biochemical substructures in synthetic chemical compounds: Application to metabolomics

Hamdalla, Mai, Grant, David, Mandoiu, Ion, Hill, Dennis, Rajasekaran, Sanguthevar, Ammar, Reda

Year:

2012

Language:

english

File:

PDF, 574 KB

english, 2012

4

[IEEE 2018 IEEE 8th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Las Vegas, NV, USA (2018.10.18-2018.10.20)] 2018 IEEE 8th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - SC1: A web-based single cell RNA-seq analysis pipeline

Moussa, Marmar, Mandoiu, Ion I.

Year:

2018

Language:

english

File:

PDF, 318 KB

english, 2018

5

Bioinformatics Algorithms (Techniques and Applications) || Topological Indices in Combinatorial Chemistry

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 211 KB

english, 2008

6

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 12304 (16th International Symposium, ISBRA 2020, Moscow, Russia, December 1â4, 2020, Proceedings) ||

Cai, Zhipeng, Mandoiu, Ion, Narasimhan, Giri, Skums, Pavel, Guo, Xuan

Year:

2020

File:

PDF, 43.82 MB

2020

7

SPIE Proceedings [SPIE 22nd European Mask and Lithography Conference - Dresden, Germany (Monday 23 January 2006)] 22nd European Mask and Lithography Conference - Multi-project reticle design and wafer dicing under uncertain demand

Kahng, Andrew B., Măndoiu, Ion, Xu, Xu, Zelikovsky, Alexander Z.

Year:

2006

Language:

english

File:

PDF, 195 KB

english, 2006

8

Bioinformatics Algorithms (Techniques and Applications) || Algorithms for Multiplex PCR Primer Set Selection with Amplification Length Constraints

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 230 KB

english, 2008

9

Computational Methods for Next Generation Sequencing Data Analysis || Discovering and Genotyping Twilight Zone Deletions

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 358 KB

english, 2016

10

Computational Methods for Next Generation Sequencing Data Analysis || Computational Approaches for Finding Long Insertions and Deletions with NGS Data

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 468 KB

english, 2016

11

Computational Methods for Next Generation Sequencing Data Analysis || Computational Approaches in Next-Generation Sequencing Data Analysis for Genome-Wide DNA Methylation Studies

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 1.48 MB

english, 2016

12

Bioinformatics Algorithms (Techniques and Applications) || Graph Theoretical Approaches to Delineate Dynamics of Biological Processes

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 1015 KB

english, 2008

13

Bioinformatics Algorithms (Techniques and Applications) || The Comparison of Phylogenetic Networks: Algorithms and Complexity

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 259 KB

english, 2008

14

[ACM Press the 2004 international symposium - Phoenix, Arizona, USA (2004.04.18-2004.04.21)] Proceedings of the 2004 international symposium on Physical design - ISPD '04 - Multi-project reticle floorplanning and wafer dicing

Kahng, Andrew B., Mǎndoiu, Ion, Wang, Qinke, Xu, Xu, Zelikovsky, Alex Z.

Year:

2004

Language:

english

File:

PDF, 306 KB

english, 2004

15

Identification of mammalian orthologs using local synteny

Jin Jun, Ion I Mandoiu, Craig E Nelson

Journal:

Year:

2009

Language:

english

File:

PDF, 521 KB

english, 2009

16

Practical Approximation Algorithms for Zero- and Bounded-Skew Trees

Zelikovsky, Alexander Z., Mandoiu, Ion I.

Journal:

SIAM Journal on Discrete Mathematics

Year:

2001

Language:

english

File:

PDF, 189 KB

english, 2001

17

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Transcriptome assembly and quantification from Ion Torrent RNA-Seq data

Mangul, Serghei, Al Seesi, Sahar, Mandoiu, Ion, Caciula, Adrian, Zelikovsky, Alex, Brinza, Dumitru

Year:

2013

Language:

english

File:

PDF, 69 KB

english, 2013

18

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 4463 || A Feature Selection Algorithm Based on Graph Theory and Random Forests for Protein Secondary Structure Prediction

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2007

Language:

english

File:

PDF, 270 KB

english, 2007

19

[ACM Press the 2001 conference - Yokohama, Japan (2001..-..)] Proceedings of the 2001 conference on Asia South Pacific design automation - ASP-DAC '01 - Provably good global buffering by multi-terminal multicommodity flow approximation

Dragan, Feodor F., Kahng, Andrew B., Mandoiu, Ion, Muddu, Sudhakar, Zelikovsky, Alexander

Year:

2001

Language:

english

File:

PDF, 140 KB

english, 2001

20

Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data

Jorge Duitama, Pramod K Srivastava, Ion I Măndoiu

Journal:

Year:

2012

Language:

english

File:

PDF, 668 KB

english, 2012

21

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 4463 || GFBA: A Biclustering Algorithm for Discovering Value-Coherent Biclusters

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2007

Language:

english

File:

PDF, 801 KB

english, 2007

22

EFFICIENT ALGORITHMS FOR DEGENERATE PRIMER SEARCH

BALLA, SUDHA, RAJASEKARAN, SANGUTHEVAR, MANDOIU, ION I.

Journal:

International Journal of Foundations of Computer Science

Year:

2007

Language:

english

File:

PDF, 697 KB

english, 2007

23

Computational Methods for Next Generation Sequencing Data Analysis || Cloud Computing for Next-Generation Sequencing Data Analysis

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 552 KB

english, 2016

24

Computational Methods for Next Generation Sequencing Data Analysis || Bisulfite-Conversion-Based Methods for DNA Methylation Sequencing Data Analysis

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 305 KB

english, 2016

25

Bioinformatics Algorithms (Techniques and Applications) || Meta-Analysis of Microarray Data

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 2.23 MB

english, 2008

26

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 5542 || Counting Faces in Split Networks

Măndoiu, Ion, Narasimhan, Giri, Zhang, Yanqing

Year:

2009

Language:

english

File:

PDF, 256 KB

english, 2009

27

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 4983 || HCV Quasispecies Assembly Using Network Flows

Măndoiu, Ion, Sunderraman, Raj, Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 575 KB

english, 2008

28

Optimal Testing of Digital Microfluidic Biochips

Paşaniuc, Bogdan, Garfinkel, Robert, Măndoiu, Ion, Zelikovsky, Alex

Journal:

INFORMS Journal on Computing

Year:

2011

Language:

english

File:

PDF, 570 KB

english, 2011

29

Guest Editors' introduction to the special section on bioinformatics research and applications

Mandoiu, Ion I., Wang, Jianxin, Zelikovsky, Alexander

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2013

Language:

english

File:

PDF, 86 KB

english, 2013

30

Computational Methods for Next Generation Sequencing Data Analysis || Computational Approaches for Studying Alternative Splicing in Nonmodel Organisms from RNA-SEQ Data

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 255 KB

english, 2016

31

Computational Methods for Next Generation Sequencing Data Analysis || An Overview And Comparison of Tools for RNA-Seq Assembly

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 549 KB

english, 2016

32

[IEEE 2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Atlanta, GA, USA (2016.10.13-2016.10.15)] 2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Pairing T Cell Receptor α and β sequences using pooling and min-cost flows

Daddio, Tyler, Mandoiu, Ion I.

Year:

2016

Language:

english

File:

PDF, 283 KB

english, 2016

33

Bioinformatics Algorithms (Techniques and Applications) || Phasing Genotypes Using a Hidden Markov Model

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 161 KB

english, 2008

34

CD11c+ MHCIIlo GM-CSF-bone marrow-derived dendritic cells act as antigen donor cells and as antigen presenting cells in neoepitope-elicited tumor immunity against a mouse fibrosarcoma

Ebrahimi-Nik, Hakimeh, Corwin, William L., Shcheglova, Tatiana, Das Mohapatra, Alok, Mandoiu, Ion I., Srivastava, Pramod K.

Journal:

Cancer Immunology, Immunotherapy

Year:

2018

Language:

english

File:

PDF, 2.07 MB

english, 2018

35

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Estimation of viral population structure from amplicon-based reads

Mancuso, Nicholas, Artyomenko, Alexander, Zelikovsky, Alex, Skums, Pavel, Mandoiu, Ion

Year:

2013

Language:

english

File:

PDF, 111 KB

english, 2013

36

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 4983 || Computational Mutagenesis of E. coli Lac Repressor: Insight into Structure-Function Relationships and Accurate Prediction of Mutant Activity

Măndoiu, Ion, Sunderraman, Raj, Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 5.20 MB

english, 2008

37

Feature selection and classifier performance on diverse bio- logical datasets

Hemphill, Edward, Lindsay, James, Lee, Chih, Măndoiu, Ion I, Nelson, Craig E

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 2.47 MB

english, 2014

38

Computational Methods for Next Generation Sequencing Data Analysis || Transcriptome Quantification and Differential Expression from NGS Data

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 513 KB

english, 2016

39

Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire

Ekaterina Gerasimov,Alex Zelikovsky,Ion Măndoiu,Yurij Ionov

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.01 MB

english, 2017

40

Bioinformatics Algorithms (Techniques and Applications) || Analytical and Algorithmic Methods for Haplotype Frequency Inference: What do they Tell Us?

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 170 KB

english, 2008

41

Area under the curve as a tool to measure kinetics of tumor growth in experimental animals

Fei Duan, Shauna Simeone, Rong Wu, James Grady, Ion Mandoiu, Pramod K. Srivastava

Journal:

Journal of Immunological Methods

Year:

2012

Language:

english

File:

PDF, 340 KB

english, 2012

42

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 5542 || Querying Protein-Protein Interaction Networks

Măndoiu, Ion, Narasimhan, Giri, Zhang, Yanqing

Year:

2009

Language:

english

File:

PDF, 879 KB

english, 2009

43

Scalable Heuristics for Design of DNA Probe Arrays

Kahng, Andrew B., Măndoiu, Ion I., Pevzner, Pavel A., Reda, Sherief, Zelikovsky, Alexander Z.

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 388 KB

english, 2004

44

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - kGEM: An EM-based algorithm for local reconstruction of viral quasispecies

Artyomenko, Alexander, Mancuso, Nicholas, Zelikovsky, Alex, Skums, Pavel, Mandoiu, Ion

Year:

2013

Language:

english

File:

PDF, 117 KB

english, 2013

45

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9096 || PRESS-PLOT: An Online Server for Protein Structural Analysis and Evaluation with Residue-level Virtual Angle Correlation Plots

Harrison, Robert, Li, Yaohang, Măndoiu, Ion

Year:

2015

Language:

english

File:

PDF, 598 KB

english, 2015

46

Computational Methods for Next Generation Sequencing Data Analysis || Error Correction of NGS Reads from Viral Populations

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 411 KB

english, 2016

47

Bioinformatics Algorithms (Techniques and Applications) || Optimization Methods for Genotype Data Analysis in Epidemiological Studies

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 248 KB

english, 2008

48

Computational Methods for Next Generation Sequencing Data Analysis || Wiley Series on Bioinformatics: Computational Techniques and Engineering

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 115 KB

english, 2016

49

Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity

Kennedy, Justin, Măndoiu, Ion, Paşaniuc, Bogdan

Journal:

Journal of Computational Biology

Year:

2008

Language:

english

File:

PDF, 660 KB

english, 2008

50

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9096 || Diploid Alignments and Haplotyping

Harrison, Robert, Li, Yaohang, Măndoiu, Ion

Year:

2015

Language:

english

File:

PDF, 261 KB

english, 2015

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